Variant report

Variant	rs72912445
Chromosome Location	chr18:44904831-44904832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr18:44904601-44904895	HepG2	liver:	n/a	n/a
2	MAFK	chr18:44904580-44904901	HepG2	liver:	n/a	chr18:44904731-44904746
3	MAFK	chr18:44904573-44904892	HepG2	liver:	n/a	chr18:44904731-44904746

Variant related genes	Relation type
MIR4527	TF binding region

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs16950652	0.84[EUR][1000 genomes]
rs16950662	0.92[EUR][1000 genomes]
rs16950719	0.92[EUR][1000 genomes]
rs16950736	0.92[EUR][1000 genomes]
rs16950741	0.92[EUR][1000 genomes]
rs16950744	0.92[EUR][1000 genomes]
rs16950754	0.92[EUR][1000 genomes]
rs16950767	0.92[EUR][1000 genomes]
rs16950777	0.92[EUR][1000 genomes]
rs28455576	0.84[EUR][1000 genomes]
rs28737231	0.84[EUR][1000 genomes]
rs55687418	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55698938	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55704228	0.92[EUR][1000 genomes]
rs55802477	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55813572	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55840418	1.00[ASN][1000 genomes]
rs55892143	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55977647	0.92[EUR][1000 genomes]
rs56014831	0.92[EUR][1000 genomes]
rs56077098	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56109704	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56287570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56317203	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58684150	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60893527	1.00[AMR][1000 genomes]
rs66485937	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66914705	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67119810	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67123015	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67514853	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67822267	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906489	0.92[EUR][1000 genomes]
rs72906494	0.92[EUR][1000 genomes]
rs72906498	0.92[EUR][1000 genomes]
rs72908505	0.92[EUR][1000 genomes]
rs72908507	0.92[EUR][1000 genomes]
rs72908508	0.92[EUR][1000 genomes]
rs72908518	0.92[EUR][1000 genomes]
rs72908529	0.92[EUR][1000 genomes]
rs72908533	0.92[EUR][1000 genomes]
rs72908537	0.92[EUR][1000 genomes]
rs72908538	0.92[EUR][1000 genomes]
rs72908542	0.92[EUR][1000 genomes]
rs72908558	0.92[EUR][1000 genomes]
rs72908572	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908575	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908588	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72909204	1.00[ASN][1000 genomes]
rs72909212	1.00[ASN][1000 genomes]
rs72909229	1.00[ASN][1000 genomes]
rs72909252	1.00[ASN][1000 genomes]
rs72909254	1.00[ASN][1000 genomes]
rs72909289	1.00[ASN][1000 genomes]
rs72910504	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910505	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910507	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910512	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910513	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910516	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72910544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72911203	1.00[ASN][1000 genomes]
rs72911205	1.00[ASN][1000 genomes]
rs72911207	1.00[ASN][1000 genomes]
rs72912419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72912475	1.00[ASN][1000 genomes]
rs72912490	1.00[ASN][1000 genomes]
rs72912494	1.00[ASN][1000 genomes]
rs72913164	1.00[ASN][1000 genomes]
rs72913166	1.00[ASN][1000 genomes]
rs72914421	1.00[AMR][1000 genomes]
rs72914425	1.00[AMR][1000 genomes]
rs72914428	1.00[AMR][1000 genomes]
rs72914433	1.00[AMR][1000 genomes]
rs72914435	1.00[AMR][1000 genomes]
rs72914437	1.00[AMR][1000 genomes]
rs72914847	0.92[EUR][1000 genomes]
rs72914848	0.92[EUR][1000 genomes]
rs72914856	0.92[EUR][1000 genomes]
rs72914857	0.92[EUR][1000 genomes]
rs72914862	0.92[EUR][1000 genomes]
rs8087053	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833641	chr18:44815063-45020202	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links