Variant report
Variant | rs72917924 |
---|---|
Chromosome Location | chr2:55707228-55707229 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-CCDC104-2 | chr2:55705577-55707573 | NONHSAT070792 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs56390609 | 1.00[AMR][1000 genomes] |
rs57298935 | 0.83[AMR][1000 genomes] |
rs57883523 | 1.00[AMR][1000 genomes] |
rs58772635 | 1.00[AMR][1000 genomes] |
rs59796313 | 0.83[AMR][1000 genomes] |
rs59822040 | 0.83[AMR][1000 genomes] |
rs60097935 | 1.00[AMR][1000 genomes] |
rs72917903 | 1.00[AMR][1000 genomes] |
rs72917948 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs72917974 | 1.00[AMR][1000 genomes] |
rs72917976 | 1.00[AMR][1000 genomes] |
rs72919765 | 1.00[AMR][1000 genomes] |
rs72919774 | 1.00[AMR][1000 genomes] |
rs72919784 | 1.00[AMR][1000 genomes] |
rs72921811 | 0.83[AMR][1000 genomes] |
rs72921812 | 1.00[AMR][1000 genomes] |
rs72923707 | 0.83[AMR][1000 genomes] |
rs72923710 | 0.83[AMR][1000 genomes] |
rs72923716 | 0.83[AMR][1000 genomes] |
rs72930820 | 1.00[AMR][1000 genomes] |
rs72930831 | 0.83[AMR][1000 genomes] |
rs72930837 | 1.00[AMR][1000 genomes] |
rs72930864 | 1.00[AMR][1000 genomes] |
rs7581700 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1006170 | chr2:55530179-55809251 | Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
2 | nsv520581 | chr2:55622825-55903016 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
3 | nsv531374 | chr2:55653723-56299784 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:55706200-55709400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
2 | chr2:55706400-55714600 | Weak transcription | K562 | blood |