Variant report

Variant	rs72918674
Chromosome Location	chr11:59944580-59944581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10897009	0.85[EUR][1000 genomes]
rs10897011	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11230147	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11230153	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11230155	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11230180	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11230183	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11230184	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1125357	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11600716	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11605427	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12226022	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12453	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17528859	0.80[AFR][1000 genomes]
rs17529983	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17602572	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1813217	0.80[AFR][1000 genomes]
rs1820430	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1834549	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1834550	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1834551	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1834557	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2081545	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2123314	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2165525	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2278867	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28628869	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28672915	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4939311	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4939312	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4939314	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55847558	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56189574	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56201148	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs583791	0.86[EUR][1000 genomes]
rs610932	0.84[EUR][1000 genomes]
rs61901691	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs624663	0.86[EUR][1000 genomes]
rs631853	0.87[EUR][1000 genomes]
rs632185	0.86[EUR][1000 genomes]
rs634475	0.87[EUR][1000 genomes]
rs636147	0.84[EUR][1000 genomes]
rs662196	0.87[EUR][1000 genomes]
rs7116190	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7124974	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7926344	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7926354	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7926729	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7926954	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7933202	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7933805	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7935829	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939882	0.85[EUR][1000 genomes]
rs7946992	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs920573	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs983392	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv33843	chr11:59908131-59945334	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv524137	chr11:59936979-59947252	Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59935800-59947200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:59937200-59946600	Genic enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:59937200-59949800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:59938400-59946600	Weak transcription	Primary B cells from cord blood	blood
5	chr11:59942200-59947000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:59942600-59949200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:59942800-59944600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:59943000-59944600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:59943600-59948600	Weak transcription	Liver	Liver
10	chr11:59943800-59946800	Weak transcription	Adipose Nuclei	Adipose
11	chr11:59943800-59947600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr11:59944000-59950400	Weak transcription	GM12878-XiMat	blood
13	chr11:59944400-59949200	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood

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