Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11129194	1.00[ASN][1000 genomes]
rs11129195	1.00[ASN][1000 genomes]
rs11129196	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11920003	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11920829	0.89[ASN][1000 genomes]
rs12492794	0.85[ASN][1000 genomes]
rs12631631	0.90[CHB][hapmap]
rs13073683	0.88[ASN][1000 genomes]
rs1483830	0.89[ASN][1000 genomes]
rs4681017	0.89[ASN][1000 genomes]
rs4681018	0.90[ASN][1000 genomes]
rs4681047	0.89[ASN][1000 genomes]
rs4681048	0.89[ASN][1000 genomes]
rs6550964	0.90[ASN][1000 genomes]
rs6550965	0.89[ASN][1000 genomes]
rs6550967	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs6775569	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6787363	0.96[ASN][1000 genomes]
rs7613965	0.89[ASN][1000 genomes]
rs9861454	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv834645	chr3:25363723-25555107	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs729236	ADAMTS20	trans	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25384800-25390600	Weak transcription	Fetal Lung	lung
2	chr3:25386800-25396200	Weak transcription	Fetal Stomach	stomach
3	chr3:25388200-25391400	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:25388400-25390600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:25388400-25391600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:25388600-25395200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:25389400-25391600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:25390400-25390600	Enhancers	Fetal Kidney	kidney
9	chr3:25390400-25390800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:25390400-25392600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:25390400-25393200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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