Variant report

Variant	rs72924867
Chromosome Location	chr3:69159232-69159233
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69158126..69159711-chr3:69164338..69166265,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12054081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6549183	0.90[ASN][1000 genomes]
rs72924842	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72924865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924874	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924876	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7621852	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv876934	chr3:69111512-69166895	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv2762334	chr3:69157085-69173375	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69142000-69160400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:69143600-69160200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:69145600-69160200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:69145800-69160200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:69146200-69160200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:69147400-69160200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:69152000-69160200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:69153600-69160000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:69153800-69160200	Weak transcription	Right Ventricle	heart
10	chr3:69153800-69162400	Weak transcription	HMEC	breast
11	chr3:69153800-69165800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:69153800-69168000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:69154000-69162000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:69154000-69162200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:69154000-69163200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:69154000-69164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:69154000-69164800	Weak transcription	Right Atrium	heart
18	chr3:69154000-69164800	Weak transcription	NHEK	skin
19	chr3:69154000-69165000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:69154000-69165800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:69154000-69167800	Weak transcription	Pancreas	Pancrea
22	chr3:69154000-69170200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:69154200-69160200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr3:69154200-69162000	Weak transcription	Brain Angular Gyrus	brain
25	chr3:69154400-69163000	Weak transcription	Fetal Lung	lung
26	chr3:69154400-69166000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:69154600-69160200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr3:69155200-69160000	Weak transcription	Primary B cells from cord blood	blood
29	chr3:69155400-69159800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr3:69155400-69159800	Weak transcription	Fetal Thymus	thymus
31	chr3:69155400-69160400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr3:69155400-69164800	Weak transcription	NH-A	brain
33	chr3:69155400-69165800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:69155600-69160200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:69155600-69160200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:69155600-69162400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr3:69155600-69164800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:69155800-69159600	Weak transcription	Primary T cells from cord blood	blood
39	chr3:69155800-69160200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:69155800-69160400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr3:69155800-69161200	Weak transcription	Fetal Heart	heart
42	chr3:69155800-69161200	Weak transcription	NHDF-Ad	bronchial
43	chr3:69155800-69162200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:69155800-69162400	Weak transcription	HSMM	muscle
45	chr3:69155800-69162400	Weak transcription	NHLF	lung
46	chr3:69155800-69162600	Weak transcription	Adipose Nuclei	Adipose
47	chr3:69155800-69165400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:69155800-69166200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr3:69155800-69170200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:69156000-69160200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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