Variant report

Variant	rs72924874
Chromosome Location	chr3:69162522-69162523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69134058..69135768-chr3:69160353..69162971,2	MCF-7	breast:
2	chr3:69161941..69162675-chr4:105417352..105417897,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144746	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12054081	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6549183	0.90[ASN][1000 genomes]
rs72924842	1.00[AMR][1000 genomes]
rs72924865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924866	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924873	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924875	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924880	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7621852	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv876934	chr3:69111512-69166895	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv2762334	chr3:69157085-69173375	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69153800-69165800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:69153800-69168000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:69154000-69163200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:69154000-69164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:69154000-69164800	Weak transcription	Right Atrium	heart
6	chr3:69154000-69164800	Weak transcription	NHEK	skin
7	chr3:69154000-69165000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:69154000-69165800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr3:69154000-69167800	Weak transcription	Pancreas	Pancrea
10	chr3:69154000-69170200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:69154400-69163000	Weak transcription	Fetal Lung	lung
12	chr3:69154400-69166000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:69155400-69164800	Weak transcription	NH-A	brain
14	chr3:69155400-69165800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:69155600-69164800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:69155800-69162600	Weak transcription	Adipose Nuclei	Adipose
17	chr3:69155800-69165400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:69155800-69166200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr3:69155800-69170200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:69156400-69162800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:69158400-69167200	Weak transcription	Brain Anterior Caudate	brain
22	chr3:69158600-69162800	Weak transcription	Brain Substantia Nigra	brain
23	chr3:69158600-69163200	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:69160200-69163800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:69160200-69163800	Enhancers	Osteobl	bone
26	chr3:69160400-69165800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr3:69160600-69162600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr3:69160600-69162800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr3:69160600-69163200	Weak transcription	Left Ventricle	heart
30	chr3:69160600-69172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr3:69161200-69163600	Enhancers	NHDF-Ad	bronchial
32	chr3:69161200-69164000	Enhancers	Psoas Muscle	Psoas
33	chr3:69161200-69164800	Enhancers	Fetal Heart	heart
34	chr3:69161600-69163200	Enhancers	HSMMtube	muscle
35	chr3:69162000-69163200	Enhancers	Brain Angular Gyrus	brain
36	chr3:69162000-69163200	Enhancers	Brain Cingulate Gyrus	brain
37	chr3:69162000-69163200	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr3:69162200-69162600	Weak transcription	Right Ventricle	heart
39	chr3:69162200-69163600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:69162200-69163800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:69162400-69162600	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr3:69162400-69162600	Enhancers	HSMM	muscle
43	chr3:69162400-69163000	Enhancers	HMEC	breast
44	chr3:69162400-69163400	Enhancers	Brain Hippocampus Middle	brain
45	chr3:69162400-69163400	Enhancers	NHLF	lung
46	chr3:69162400-69163600	Enhancers	Muscle Satellite Cultured Cells	--

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