Variant report

Variant	rs72927358
Chromosome Location	chr4:101901796-101901797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101897670..101899560-chr4:101901364..101903543,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2132694	0.92[EUR][1000 genomes]
rs62308974	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840	0.81[EUR][1000 genomes]
rs955026	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101896800-101901800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:101896800-101906000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:101896800-101906400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:101897000-101902600	Weak transcription	Right Atrium	heart
5	chr4:101897000-101902800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:101897200-101902800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:101897200-101906200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:101897400-101903600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:101898800-101902800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:101898800-101907600	Weak transcription	Left Ventricle	heart
11	chr4:101899200-101901800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:101899400-101902000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:101899400-101902600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:101899400-101902600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:101899400-101902600	Weak transcription	HMEC	breast
16	chr4:101899600-101902600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:101899800-101902000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr4:101899800-101902400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:101899800-101902600	Weak transcription	Adipose Nuclei	Adipose
20	chr4:101899800-101902600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:101901200-101902400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:101901200-101902600	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:101901200-101902800	Weak transcription	Fetal Stomach	stomach

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