Variant report

Variant	rs72932180
Chromosome Location	chr1:71358721-71358722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10518349	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12128044	0.89[EUR][1000 genomes]
rs1409983	0.89[EUR][1000 genomes]
rs72932181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv871604	chr1:71353104-71361673	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71355600-71359200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:71356400-71359400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:71356600-71359000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:71356600-71359200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:71356600-71359200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr1:71356800-71359200	Enhancers	NHDF-Ad	bronchial
7	chr1:71357400-71358800	Weak transcription	Adipose Nuclei	Adipose
8	chr1:71358000-71359000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:71358000-71361000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:71358200-71361400	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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