Variant report

Variant	rs72932719
Chromosome Location	chr3:98830270-98830271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs72930773	1.00[AMR][1000 genomes]
rs72930776	1.00[AMR][1000 genomes]
rs72930781	1.00[AMR][1000 genomes]
rs72930792	1.00[AMR][1000 genomes]
rs72932721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932744	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72932768	0.89[AFR][1000 genomes]
rs72932787	0.94[AFR][1000 genomes]
rs72932790	0.94[AFR][1000 genomes]
rs72934718	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877215	chr3:98804408-98884699	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999649	chr3:98815244-98947271	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536664	chr3:98815244-98947271	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98827600-98836600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:98828000-98830400	Weak transcription	HSMM	muscle
3	chr3:98828000-98837800	Weak transcription	NH-A	brain
4	chr3:98828000-98838000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:98828200-98837200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:98829200-98832200	Weak transcription	Fetal Brain Male	brain
7	chr3:98829600-98830600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:98829600-98831200	Enhancers	HMEC	breast
9	chr3:98830000-98830600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:98830200-98830600	Enhancers	NHEK	skin
11	chr3:98830200-98830600	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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