Variant report

Variant	rs72938557
Chromosome Location	chr3:98676910-98676911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:98675333..98676915-chr3:98681651..98683756,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13085453	0.81[AFR][1000 genomes]
rs57492353	0.81[AFR][1000 genomes]
rs58977425	1.00[AFR][1000 genomes]
rs59581962	1.00[AFR][1000 genomes]
rs61133181	0.81[AFR][1000 genomes]
rs72936622	0.91[AFR][1000 genomes]
rs72936644	0.91[AFR][1000 genomes]
rs72936652	0.91[AFR][1000 genomes]
rs72936657	0.91[AFR][1000 genomes]
rs72936667	0.91[AFR][1000 genomes]
rs72936668	0.91[AFR][1000 genomes]
rs72936670	0.91[AFR][1000 genomes]
rs72936673	0.91[AFR][1000 genomes]
rs72936691	0.91[AFR][1000 genomes]
rs72936692	0.91[AFR][1000 genomes]
rs72936694	0.83[AFR][1000 genomes]
rs72936700	0.91[AFR][1000 genomes]
rs72938507	0.91[AFR][1000 genomes]
rs72938515	0.91[AFR][1000 genomes]
rs72938525	0.91[AFR][1000 genomes]
rs72938535	1.00[AFR][1000 genomes]
rs72938539	1.00[AFR][1000 genomes]
rs72938573	1.00[AFR][1000 genomes]
rs72938584	1.00[AFR][1000 genomes]
rs72938585	1.00[AFR][1000 genomes]
rs72940515	0.81[AFR][1000 genomes]
rs72940521	0.81[AFR][1000 genomes]
rs72940528	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv3440755	chr3:98666311-98680865	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98674200-98677000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:98674200-98678800	Weak transcription	NH-A	brain
3	chr3:98674200-98679400	Weak transcription	NHLF	lung
4	chr3:98674200-98679600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:98674400-98677200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:98674400-98677600	Weak transcription	HMEC	breast
7	chr3:98674400-98679600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:98674400-98679600	Weak transcription	Osteobl	bone
9	chr3:98674400-98681000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:98674600-98678800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:98675000-98679400	Weak transcription	NHDF-Ad	bronchial
12	chr3:98675200-98677600	Weak transcription	NHEK	skin
13	chr3:98675200-98680800	Weak transcription	Fetal Lung	lung
14	chr3:98675600-98677200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:98676000-98678000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:98676000-98678800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:98676400-98679800	Enhancers	A549	lung
18	chr3:98676800-98677400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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