Variant report

Variant	rs7294111
Chromosome Location	chr1:160908592-160908593
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10742883	0.87[AFR][1000 genomes]
rs10742887	0.81[AFR][1000 genomes]
rs10769450	0.87[AFR][1000 genomes]
rs10769451	0.87[AFR][1000 genomes]
rs10769468	0.87[AFR][1000 genomes]
rs10839072	0.87[AFR][1000 genomes]
rs10839099	0.87[AFR][1000 genomes]
rs1827966	0.84[AFR][1000 genomes]
rs1910841	0.80[AFR][1000 genomes]
rs2089387	0.87[AFR][1000 genomes]
rs2089390	0.87[AFR][1000 genomes]
rs2102352	0.87[AFR][1000 genomes]
rs2174708	0.87[AFR][1000 genomes]
rs2202610	0.87[AFR][1000 genomes]
rs2202611	0.87[AFR][1000 genomes]
rs2221543	0.87[AFR][1000 genomes]
rs2865601	0.80[AFR][1000 genomes]
rs2865670	0.81[AFR][1000 genomes]
rs2865674	0.87[AFR][1000 genomes]
rs2865675	0.87[AFR][1000 genomes]
rs2903045	0.87[AFR][1000 genomes]
rs3920130	0.80[AFR][1000 genomes]
rs4882196	0.80[AFR][1000 genomes]
rs4882198	0.87[AFR][1000 genomes]
rs4882212	0.87[AFR][1000 genomes]
rs4882217	0.87[AFR][1000 genomes]
rs71454925	0.80[AFR][1000 genomes]
rs7294090	0.87[AFR][1000 genomes]
rs8175626	0.84[AFR][1000 genomes]
rs8175639	0.84[AFR][1000 genomes]
rs8175677	0.87[AFR][1000 genomes]
rs8175691	0.87[AFR][1000 genomes]
rs8186165	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160905800-160911200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:160905800-160919800	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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