Variant report

Variant	rs7294361
Chromosome Location	chr12:11786468-11786469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1075239	1.00[EUR][1000 genomes]
rs1116686	1.00[EUR][1000 genomes]
rs12099745	1.00[EUR][1000 genomes]
rs59053741	1.00[EUR][1000 genomes]
rs7135232	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7294487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7312834	0.96[ASN][1000 genomes]
rs73286648	1.00[EUR][1000 genomes]
rs7957684	1.00[EUR][1000 genomes]
rs7957687	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898803	chr12:11757867-11794636	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv470267	chr12:11767406-11787989	Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11777000-11788200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:11783400-11788200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:11783400-11788600	Weak transcription	Thymus	Thymus
4	chr12:11786400-11786600	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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