Variant report

Variant	rs7294385
Chromosome Location	chr12:118117746-118117747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10850885	0.96[EUR][1000 genomes]
rs11068615	0.89[EUR][1000 genomes]
rs11068617	0.81[GIH][hapmap]
rs1446425	0.83[GIH][hapmap]
rs487894	0.96[CEU][hapmap];0.81[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs530454	0.85[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118105400-118118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:118110200-118122600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:118117200-118119400	Enhancers	HUVEC	blood vessel
4	chr12:118117400-118118600	Enhancers	NH-A	brain
5	chr12:118117400-118118800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr12:118117400-118118800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:118117400-118118800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:118117400-118118800	Enhancers	A549	lung
9	chr12:118117400-118119000	Enhancers	NHDF-Ad	bronchial
10	chr12:118117600-118118600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr12:118117600-118118600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr12:118117600-118118800	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links