Variant report

Variant	rs72946870
Chromosome Location	chr4:143419052-143419053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143417636..143419630-chr4:143766878..143768901,2	MCF-7	breast:
2	chr4:143406582..143409502-chr4:143418900..143421549,4	MCF-7	breast:
3	chr4:143413858..143417605-chr4:143417638..143420686,5	MCF-7	breast:
4	chr4:143392241..143398966-chr4:143412985..143424496,30	MCF-7	breast:
5	chr4:143418608..143422972-chr4:143431546..143435258,5	MCF-7	breast:
6	chr4:143388381..143398737-chr4:143415738..143428678,26	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10434184	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11930849	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11947710	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58048713	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59456427	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946807	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72946813	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72946826	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72946834	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946835	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946839	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946853	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946855	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72946865	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946874	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946889	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946892	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946898	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948704	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948719	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2762467	chr4:143412932-143420262	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143418400-143419600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:143418600-143419200	Enhancers	Fetal Heart	heart
3	chr4:143419000-143419200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links