Variant report

Variant	rs72946896
Chromosome Location	chr4:143429507-143429508
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143427176..143429713-chr4:143432403..143434347,2	K562	blood:
2	chr4:143424625..143426969-chr4:143428786..143431157,2	MCF-7	breast:
3	chr4:143427468..143430250-chr4:143437553..143439341,2	MCF-7	breast:
4	chr4:143427848..143430198-chr4:143433217..143434733,2	MCF-7	breast:
5	chr4:143426831..143429713-chr4:143432293..143434347,2	K562	blood:
6	chr4:143389462..143399452-chr4:143428707..143442488,28	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10434184	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11930849	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11947710	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58048713	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59456427	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946807	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72946813	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72946826	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72946834	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946835	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946839	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946853	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946855	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72946865	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946870	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946874	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946877	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946889	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946892	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946898	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72946900	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948712	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948719	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143425600-143429600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:143428800-143453000	Weak transcription	Primary hematopoietic stem cells	blood

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