Variant report

Variant	rs72947079
Chromosome Location	chr6:101281527-101281528
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13193963	0.82[ASN][1000 genomes]
rs35432469	0.82[ASN][1000 genomes]
rs4840156	0.82[ASN][1000 genomes]
rs998254	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1020692	chr6:101136992-101426071	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886457	chr6:101158950-101487473	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1016353	chr6:101172705-101304041	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	esv2763587	chr6:101277874-101510491	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101184400-101304600	Weak transcription	Hela-S3	cervix
2	chr6:101213600-101281600	Weak transcription	Gastric	stomach
3	chr6:101214800-101281600	Weak transcription	Left Ventricle	heart
4	chr6:101215200-101311400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:101233600-101306600	Weak transcription	K562	blood
6	chr6:101238000-101296200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:101244600-101296200	Weak transcription	NH-A	brain
8	chr6:101249400-101298200	Weak transcription	A549	lung
9	chr6:101252200-101293800	Weak transcription	HMEC	breast
10	chr6:101252200-101295600	Weak transcription	NHDF-Ad	bronchial
11	chr6:101253200-101294800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:101253400-101284400	Weak transcription	Primary B cells from cord blood	blood
13	chr6:101253400-101295600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:101253400-101295800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:101253400-101304200	Weak transcription	Primary T cells from cord blood	blood
16	chr6:101253600-101284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:101253800-101292600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:101253800-101295600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:101257600-101294200	Weak transcription	Osteobl	bone
20	chr6:101258200-101295600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:101264000-101295600	Weak transcription	HepG2	liver
22	chr6:101269000-101281600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:101269200-101326600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:101271200-101296000	Weak transcription	Ovary	ovary
25	chr6:101271400-101296000	Weak transcription	HSMMtube	muscle
26	chr6:101272200-101289800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:101273600-101291200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr6:101274600-101295600	Weak transcription	Fetal Thymus	thymus
29	chr6:101274800-101282000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr6:101275800-101314400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr6:101276600-101284400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:101276600-101294200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:101276600-101295400	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr6:101277000-101290000	Weak transcription	Fetal Lung	lung
35	chr6:101277000-101295600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr6:101277200-101295800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:101277400-101299800	Weak transcription	Esophagus	oesophagus
38	chr6:101277600-101281600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:101277600-101281600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:101277600-101281600	Weak transcription	Fetal Stomach	stomach
41	chr6:101277600-101284600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:101277600-101288800	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr6:101277600-101293600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:101277600-101295400	Weak transcription	Placenta	Placenta
45	chr6:101277600-101295600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:101277600-101295800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:101277600-101296000	Weak transcription	Fetal Intestine Large	intestine
48	chr6:101277600-101296400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:101277600-101296400	Weak transcription	Fetal Muscle Leg	muscle
50	chr6:101277600-101299600	Weak transcription	Thymus	Thymus

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