Variant report

Variant	rs7294859
Chromosome Location	chr12:86479492-86479493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10746359	1.00[CHB][hapmap]
rs10779224	1.00[CHB][hapmap]
rs10779225	1.00[CHB][hapmap]
rs10779227	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10779236	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10863128	0.87[ASN][1000 genomes]
rs10863129	0.82[EUR][1000 genomes]
rs10863139	1.00[CHB][hapmap]
rs10863141	1.00[CHB][hapmap]
rs10863149	1.00[CHB][hapmap]
rs10863164	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11117148	1.00[CHB][hapmap]
rs11117152	1.00[CHB][hapmap]
rs11117154	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11513955	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs11614214	1.00[CHB][hapmap]
rs12298516	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1354258	1.00[CHB][hapmap]
rs1502803	1.00[CHB][hapmap]
rs1847206	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61931120	0.87[ASN][1000 genomes]
rs61931121	0.87[ASN][1000 genomes]
rs61931135	0.83[ASN][1000 genomes]
rs6538021	0.83[AFR][1000 genomes]
rs6539944	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6539947	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7136221	0.87[ASN][1000 genomes]
rs7295033	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7302043	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7307686	0.87[ASN][1000 genomes]
rs7398950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7485853	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7486591	0.82[CEU][hapmap]
rs7489114	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7961367	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7965726	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7967417	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7971447	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs839091	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs839134	0.87[AFR][1000 genomes]
rs839135	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs839139	1.00[YRI][hapmap]
rs839181	0.84[ASN][1000 genomes]
rs839183	0.83[AFR][1000 genomes]
rs839186	0.83[AFR][1000 genomes]
rs839187	0.83[AFR][1000 genomes]
rs9668994	1.00[JPT][hapmap]
rs9669353	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9706029	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9738989	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9804820	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832476	chr12:86389751-86497122	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
3	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv3345033	chr12:86458294-86514745	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv973098	chr12:86477663-86482904	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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