Variant report

Variant	rs72948842
Chromosome Location	chr18:30880200-30880201
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11081796	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12150734	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12150736	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12150837	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1391025	0.82[ASN][1000 genomes]
rs16964459	0.82[ASN][1000 genomes]
rs28368446	0.81[ASN][1000 genomes]
rs28374541	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28375135	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28394340	0.82[ASN][1000 genomes]
rs28457646	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28521216	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28633937	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4319841	0.94[ASN][1000 genomes]
rs4383225	0.82[ASN][1000 genomes]
rs4405623	0.82[ASN][1000 genomes]
rs4432316	0.82[ASN][1000 genomes]
rs4455039	0.82[ASN][1000 genomes]
rs4494628	0.82[ASN][1000 genomes]
rs4505412	0.99[ASN][1000 genomes]
rs4573999	0.82[ASN][1000 genomes]
rs4600534	0.82[ASN][1000 genomes]
rs4630625	0.96[ASN][1000 genomes]
rs4632197	0.82[ASN][1000 genomes]
rs4633796	0.82[ASN][1000 genomes]
rs56168034	0.84[ASN][1000 genomes]
rs56675518	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56959895	0.82[ASN][1000 genomes]
rs57082165	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57204429	0.84[ASN][1000 genomes]
rs57358360	0.82[ASN][1000 genomes]
rs58448816	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59342170	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66481582	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66560059	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66714151	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67134528	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67274971	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67373469	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67560478	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67772507	0.84[ASN][1000 genomes]
rs67783924	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67881407	0.84[ASN][1000 genomes]
rs68068381	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68190773	0.84[ASN][1000 genomes]
rs72947172	0.81[ASN][1000 genomes]
rs72947174	0.81[ASN][1000 genomes]
rs72948837	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72949130	0.84[ASN][1000 genomes]
rs72951055	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72951085	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7351024	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7351029	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9951961	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9952144	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9953737	0.84[ASN][1000 genomes]
rs9962637	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9962832	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9962884	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909527	chr18:30548902-30908581	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv576640	chr18:30854237-30930418	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv576641	chr18:30856949-30930418	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv1063958	chr18:30862717-30931616	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2762000	chr18:30862729-30931628	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv909528	chr18:30875118-31011926	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30877200-30880400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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