Variant report
| Variant | rs72952927 |
|---|---|
| Chromosome Location | chr1:91885407-91885408 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:91870183..91872157-chr1:91884552..91886333,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000162669 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10782970 | 1.00[EUR][1000 genomes] |
| rs13447567 | 1.00[EUR][1000 genomes] |
| rs13447569 | 1.00[EUR][1000 genomes] |
| rs1508591 | 1.00[EUR][1000 genomes] |
| rs17131494 | 1.00[EUR][1000 genomes] |
| rs477003 | 1.00[EUR][1000 genomes] |
| rs539048 | 1.00[EUR][1000 genomes] |
| rs544077 | 1.00[EUR][1000 genomes] |
| rs546872 | 1.00[EUR][1000 genomes] |
| rs6669300 | 1.00[EUR][1000 genomes] |
| rs7520738 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949516 | chr1:91644418-92109261 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
