Variant report

Variant	rs72954314
Chromosome Location	chr6:74939737-74939738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10485388	0.81[ASN][1000 genomes]
rs11751061	0.81[ASN][1000 genomes]
rs11751771	0.83[ASN][1000 genomes]
rs11752920	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11754164	0.83[ASN][1000 genomes]
rs11754468	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11754988	1.00[AFR][1000 genomes]
rs11758445	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11759133	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191462	0.81[ASN][1000 genomes]
rs12193999	0.83[ASN][1000 genomes]
rs12198091	0.81[ASN][1000 genomes]
rs12202674	0.83[ASN][1000 genomes]
rs16884519	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16884624	0.82[EUR][1000 genomes]
rs16884690	0.81[EUR][1000 genomes]
rs1817735	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3898077	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3923228	0.81[ASN][1000 genomes]
rs4537105	0.81[ASN][1000 genomes]
rs4546447	0.81[ASN][1000 genomes]
rs55768795	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55784940	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55962148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56004196	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56020332	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56138029	0.81[ASN][1000 genomes]
rs56168817	0.81[EUR][1000 genomes]
rs56232317	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56362119	0.81[ASN][1000 genomes]
rs67076726	0.82[EUR][1000 genomes]
rs6926572	0.81[EUR][1000 genomes]
rs72950543	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72950546	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72952371	0.81[ASN][1000 genomes]
rs72952395	0.81[ASN][1000 genomes]
rs72952398	0.81[ASN][1000 genomes]
rs72953763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72957983	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72957986	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72957999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72959615	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72959617	1.00[AMR][1000 genomes]
rs72959619	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72962230	0.83[ASN][1000 genomes]
rs72964214	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72967265	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72967284	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72967286	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7755776	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7776273	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74939400-74939800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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