Variant report

Variant	rs72955123
Chromosome Location	chr6:74760355-74760356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11751175	0.91[ASN][1000 genomes]
rs11756254	0.93[ASN][1000 genomes]
rs12190509	0.91[ASN][1000 genomes]
rs12191866	0.91[ASN][1000 genomes]
rs12205582	0.91[ASN][1000 genomes]
rs12205749	0.91[ASN][1000 genomes]
rs12206043	0.91[ASN][1000 genomes]
rs12209564	0.91[ASN][1000 genomes]
rs12213297	0.91[ASN][1000 genomes]
rs12215639	0.91[ASN][1000 genomes]
rs4501395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644011	0.91[ASN][1000 genomes]
rs55755114	0.98[EUR][1000 genomes]
rs55789428	0.91[ASN][1000 genomes]
rs56104278	0.91[ASN][1000 genomes]
rs56343698	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56396434	0.93[ASN][1000 genomes]
rs72952344	0.98[EUR][1000 genomes]
rs72955114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955171	0.91[ASN][1000 genomes]
rs72955173	0.91[ASN][1000 genomes]
rs72955185	0.91[ASN][1000 genomes]
rs72955196	0.91[ASN][1000 genomes]
rs72955199	0.91[ASN][1000 genomes]
rs72955201	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1030389	chr6:74606701-74811706	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3440413	chr6:74741688-74791357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74754800-74760400	Weak transcription	Fetal Intestine Small	intestine
2	chr6:74758800-74760400	Weak transcription	HepG2	liver

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