Variant report

Variant	rs72955196
Chromosome Location	chr6:74776844-74776845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10485388	0.99[EUR][1000 genomes]
rs11751061	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11751175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751771	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11754164	0.91[EUR][1000 genomes]
rs11756254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11757198	0.94[EUR][1000 genomes]
rs11757917	0.80[EUR][1000 genomes]
rs12190509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191462	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12191866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193999	0.95[EUR][1000 genomes]
rs12198091	0.97[EUR][1000 genomes]
rs12202104	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs12202674	0.93[EUR][1000 genomes]
rs12205582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12206043	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209571	0.99[EUR][1000 genomes]
rs12213297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213804	0.83[EUR][1000 genomes]
rs12215639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923228	0.98[EUR][1000 genomes]
rs4279396	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4501395	0.91[ASN][1000 genomes]
rs4537105	0.95[EUR][1000 genomes]
rs4546447	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4644011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55789428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56104278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56138029	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56343698	0.87[ASN][1000 genomes]
rs56362119	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56396434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66472340	1.00[EUR][1000 genomes]
rs66865230	1.00[EUR][1000 genomes]
rs72952371	1.00[EUR][1000 genomes]
rs72952395	0.97[EUR][1000 genomes]
rs72952398	0.98[EUR][1000 genomes]
rs72955114	0.91[ASN][1000 genomes]
rs72955123	0.91[ASN][1000 genomes]
rs72955171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72962230	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030389	chr6:74606701-74811706	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3440413	chr6:74741688-74791357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886161	chr6:74765488-74800529	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1017333	chr6:74776830-74907758	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv538307	chr6:74776830-74907758	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74776400-74778600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:74776400-74778800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:74776400-74783000	Weak transcription	NH-A	brain
4	chr6:74776600-74777000	Enhancers	NHEK	skin
5	chr6:74776600-74777200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:74776600-74778600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:74776600-74778600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:74776600-74778600	Weak transcription	NHDF-Ad	bronchial
9	chr6:74776600-74778600	Weak transcription	Osteobl	bone
10	chr6:74776600-74778800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:74776600-74779200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:74776600-74779400	Weak transcription	HSMM	muscle
13	chr6:74776600-74782800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:74776800-74778800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:74776800-74778800	Weak transcription	HMEC	breast
16	chr6:74776800-74779000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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