Variant report

Variant	rs7295577
Chromosome Location	chr12:63133220-63133221
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63129972..63133446-chr12:63133906..63136834,3	MCF-7	breast:
2	chr12:63131148..63134092-chr12:63139038..63140711,2	K562	blood:
3	chr12:63124722..63127386-chr12:63133174..63134822,2	MCF-7	breast:
4	chr12:63131446..63134061-chr12:63135870..63138526,3	K562	blood:
5	chr12:63131484..63133718-chr12:63162471..63164846,2	MCF-7	breast:
6	chr12:62995294..62997909-chr12:63132978..63135791,2	MCF-7	breast:
7	chr12:63120098..63121985-chr12:63132588..63135905,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000199179	Chromatin interaction
ENSG00000257354	Chromatin interaction
ENSG00000221949	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10877911	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11174620	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs11174621	0.93[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11174626	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12315418	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7308302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7312352	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7954555	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7970056	0.85[CEU][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
2	chr12:63123000-63152000	Weak transcription	Gastric	stomach
3	chr12:63123200-63137400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr12:63124200-63145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:63125600-63138400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr12:63125800-63133600	Weak transcription	Fetal Kidney	kidney
7	chr12:63125800-63143000	Weak transcription	Psoas Muscle	Psoas
8	chr12:63126000-63133600	Weak transcription	Adipose Nuclei	Adipose
9	chr12:63126000-63138400	Weak transcription	Left Ventricle	heart
10	chr12:63126000-63149200	Weak transcription	Lung	lung
11	chr12:63126200-63138600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr12:63126200-63155600	Weak transcription	Aorta	Aorta
13	chr12:63126400-63133600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr12:63127600-63134400	Enhancers	A549	lung
15	chr12:63127600-63137800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr12:63130000-63138400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr12:63130200-63153200	Weak transcription	Fetal Intestine Large	intestine
18	chr12:63131200-63133800	Enhancers	HSMMtube	muscle
19	chr12:63131200-63134200	Enhancers	Fetal Muscle Leg	muscle
20	chr12:63131400-63138200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr12:63131400-63138400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:63131400-63138400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:63131400-63148000	Weak transcription	Fetal Intestine Small	intestine
24	chr12:63131600-63133800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr12:63131600-63134000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr12:63131600-63134200	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr12:63131600-63134200	Enhancers	HSMM	muscle
28	chr12:63131600-63134200	Enhancers	Osteobl	bone
29	chr12:63131600-63134400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:63131600-63134400	Enhancers	Thymus	Thymus
31	chr12:63131600-63136000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr12:63131800-63134600	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr12:63132000-63133800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr12:63132000-63134200	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr12:63132000-63134200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr12:63132000-63134400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr12:63132000-63135000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr12:63132200-63133800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr12:63132200-63134200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr12:63132200-63134400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr12:63132200-63136400	Enhancers	Brain Substantia Nigra	brain
42	chr12:63132400-63133600	Enhancers	Fetal Muscle Trunk	muscle
43	chr12:63132400-63134400	Enhancers	Brain Cingulate Gyrus	brain
44	chr12:63132600-63133400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr12:63132600-63133600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr12:63132600-63133600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr12:63132600-63133600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr12:63132600-63133600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr12:63132600-63133600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr12:63132600-63134000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links