Variant report

Variant	rs72956799
Chromosome Location	chr4:106887498-106887499
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106871716..106874028-chr4:106885869..106887755,2	MCF-7	breast:
2	chr4:106887456..106889900-chr4:106890569..106892940,2	K562	blood:
3	chr4:106880865..106883226-chr4:106885704..106887688,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11722309	0.82[AFR][1000 genomes]
rs11733103	0.82[AFR][1000 genomes]
rs11735326	0.82[AFR][1000 genomes]
rs28421844	0.82[AFR][1000 genomes]
rs28457630	0.82[AFR][1000 genomes]
rs28627523	0.82[AFR][1000 genomes]
rs72956796	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72956798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958805	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958806	0.82[AFR][1000 genomes]
rs72958808	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958813	0.82[AFR][1000 genomes]
rs72958815	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958826	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
2	chr4:106868400-106892000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:106872200-106888400	Weak transcription	Lung	lung
4	chr4:106873000-106888400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:106878000-106888400	Weak transcription	Ovary	ovary
6	chr4:106879000-106888200	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:106879200-106888200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:106881000-106890400	Weak transcription	Small Intestine	intestine
9	chr4:106884800-106888400	Weak transcription	Right Atrium	heart
10	chr4:106885000-106888200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:106885400-106887800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:106885400-106888200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:106885400-106888400	Weak transcription	Left Ventricle	heart
14	chr4:106885400-106888400	Weak transcription	Right Ventricle	heart
15	chr4:106885400-106909800	Weak transcription	Aorta	Aorta
16	chr4:106885600-106891600	Weak transcription	Fetal Intestine Small	intestine
17	chr4:106885600-106894000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:106886600-106887600	Enhancers	Fetal Intestine Large	intestine
19	chr4:106886600-106888000	Enhancers	Fetal Kidney	kidney
20	chr4:106886600-106888200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:106886600-106888200	Enhancers	Hela-S3	cervix
22	chr4:106886600-106888600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:106886600-106888600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:106886600-106888600	Enhancers	Adipose Nuclei	Adipose
25	chr4:106886600-106888600	Enhancers	K562	blood
26	chr4:106886600-106888800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:106886600-106888800	Enhancers	HSMMtube	muscle
28	chr4:106886600-106889200	Enhancers	Fetal Heart	heart
29	chr4:106886600-106894600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr4:106886800-106887600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr4:106886800-106887600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:106886800-106887800	Enhancers	HSMM	muscle
33	chr4:106886800-106888600	Enhancers	Placenta	Placenta
34	chr4:106886800-106888800	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr4:106886800-106889200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr4:106887000-106887800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr4:106887000-106887800	Enhancers	Muscle Satellite Cultured Cells	--
38	chr4:106887000-106888000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr4:106887000-106888600	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr4:106887000-106888600	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr4:106887000-106888800	Enhancers	H9 Cell Line	embryonic stem cell
42	chr4:106887000-106888800	Enhancers	Psoas Muscle	Psoas
43	chr4:106887200-106887600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:106887200-106888000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr4:106887200-106888000	Enhancers	NHEK	skin
46	chr4:106887200-106888800	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr4:106887200-106889200	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr4:106887200-106889200	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr4:106887200-106889200	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr4:106887200-106890400	Weak transcription	Spleen	Spleen

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