Variant report

Variant	rs72957637
Chromosome Location	chr11:70814065-70814066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70813810..70815755-chr11:70820348..70822135,2	K562	blood:
2	chr11:70801135..70803050-chr11:70811922..70814803,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11823567	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12420697	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17431746	1.00[ASN][1000 genomes]
rs55753840	1.00[ASN][1000 genomes]
rs56188890	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123599	1.00[ASN][1000 genomes]
rs72957631	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957634	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72957640	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957676	1.00[ASN][1000 genomes]
rs72957677	1.00[ASN][1000 genomes]
rs72957679	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70795800-70814200	Weak transcription	Stomach Mucosa	stomach
2	chr11:70796000-70820000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:70799200-70823400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:70799800-70831000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:70800600-70850800	Weak transcription	Right Atrium	heart
6	chr11:70800800-70824400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:70801200-70824600	Strong transcription	Liver	Liver
8	chr11:70803600-70820200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:70805400-70820000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:70805800-70819600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:70806000-70820200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr11:70806200-70818000	Weak transcription	Placenta	Placenta
13	chr11:70806400-70820400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:70809000-70816600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:70809400-70817600	Weak transcription	Fetal Intestine Large	intestine
16	chr11:70809400-70817600	Weak transcription	Gastric	stomach
17	chr11:70809400-70818600	Weak transcription	Pancreas	Pancrea
18	chr11:70809400-70819000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:70809400-70819000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:70809400-70819200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:70809400-70820000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:70809400-70820000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr11:70809400-70820200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:70809400-70835200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:70809600-70817800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:70809600-70820200	Weak transcription	A549	lung
27	chr11:70809800-70816600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:70809800-70817600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:70809800-70818000	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr11:70812000-70816400	Strong transcription	Fetal Intestine Small	intestine
31	chr11:70813400-70814400	Enhancers	Lung	lung
32	chr11:70813600-70814200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:70813600-70814200	Enhancers	Fetal Brain Female	brain
34	chr11:70813800-70814400	Bivalent Enhancer	Adipose Nuclei	Adipose
35	chr11:70813800-70814400	Strong transcription	Fetal Stomach	stomach
36	chr11:70813800-70814600	Enhancers	Osteobl	bone
37	chr11:70813800-70830200	Strong transcription	HepG2	liver
38	chr11:70814000-70814200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:70814000-70814400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:70814000-70814400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:70814000-70814600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:70814000-70814600	Enhancers	Spleen	Spleen

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