Variant report

Variant	rs72957647
Chromosome Location	chr6:101876656-101876657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1475916	0.89[EUR][1000 genomes]
rs2518159	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2518225	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2518226	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2518228	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2518231	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2518234	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2518238	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518249	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2579933	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2579934	1.00[AFR][1000 genomes]
rs2788275	1.00[AFR][1000 genomes]
rs2788276	0.86[EUR][1000 genomes]
rs2788281	0.84[EUR][1000 genomes]
rs72957617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957642	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957644	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957668	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101851000-101882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:101864400-101882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:101869200-101878400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:101870600-101882600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:101871400-101878400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:101874000-101877000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:101876600-101877000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:101876600-101877400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:101876600-101877400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:101876600-101879200	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links