Variant report

Variant	rs72957668
Chromosome Location	chr6:101882705-101882706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1475916	0.97[EUR][1000 genomes]
rs2518159	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2518225	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2518226	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2518228	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2518231	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2518234	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2518238	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518249	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2579933	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2579934	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2788275	1.00[AFR][1000 genomes]
rs2788276	0.94[EUR][1000 genomes]
rs2788281	0.92[EUR][1000 genomes]
rs72957617	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957642	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957644	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957647	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957648	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv886459	chr6:101880376-101951502	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101864400-101882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:101877200-101883200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:101878000-101882800	Weak transcription	Brain Anterior Caudate	brain
4	chr6:101879200-101892600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:101882400-101883000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:101882600-101882800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:101882600-101883400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:101882600-101883400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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