Variant report

Variant	rs72957679
Chromosome Location	chr11:70848278-70848279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs17431746	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28811899	0.82[EUR][1000 genomes]
rs28876818	0.82[EUR][1000 genomes]
rs34402475	0.83[EUR][1000 genomes]
rs35136877	0.81[AMR][1000 genomes]
rs4348928	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55726773	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55753840	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55757613	0.90[EUR][1000 genomes]
rs56035448	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56144630	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56181437	0.83[EUR][1000 genomes]
rs56188890	0.87[ASN][1000 genomes]
rs56291131	0.82[EUR][1000 genomes]
rs56341503	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56393668	0.81[EUR][1000 genomes]
rs58093994	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58713366	0.91[EUR][1000 genomes]
rs59052115	0.81[EUR][1000 genomes]
rs60079515	0.81[EUR][1000 genomes]
rs60524701	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61582992	0.82[EUR][1000 genomes]
rs66521164	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66668954	0.91[EUR][1000 genomes]
rs7116150	0.82[EUR][1000 genomes]
rs7123599	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7125114	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72957115	0.82[EUR][1000 genomes]
rs72957631	0.87[ASN][1000 genomes]
rs72957637	0.87[ASN][1000 genomes]
rs72957640	0.87[ASN][1000 genomes]
rs72957676	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72957677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72957686	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72957688	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72957690	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72957691	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72957699	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72959503	0.86[EUR][1000 genomes]
rs72959507	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72959509	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72959517	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72959521	0.83[EUR][1000 genomes]
rs72959524	0.82[EUR][1000 genomes]
rs7931474	0.82[AMR][1000 genomes]
rs9888203	0.81[EUR][1000 genomes]
rs9888294	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9888299	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70800600-70850800	Weak transcription	Right Atrium	heart
2	chr11:70824000-70861600	Weak transcription	A549	lung
3	chr11:70827400-70851200	Weak transcription	Placenta	Placenta
4	chr11:70832200-70848400	Weak transcription	Gastric	stomach
5	chr11:70832200-70860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:70832200-70863600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:70832200-70864400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:70841000-70848600	Weak transcription	Pancreas	Pancrea
9	chr11:70841200-70857400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:70841800-70851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:70842400-70860600	Weak transcription	Fetal Intestine Large	intestine
12	chr11:70842600-70851000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:70842600-70860800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:70843200-70856800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:70843400-70857200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:70843800-70850000	Weak transcription	HSMM	muscle
17	chr11:70846000-70852800	Strong transcription	HepG2	liver
18	chr11:70847200-70850800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:70847200-70851800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:70847400-70849800	Weak transcription	Fetal Stomach	stomach
21	chr11:70847600-70848400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:70847600-70848400	Weak transcription	Fetal Intestine Small	intestine
23	chr11:70847800-70850000	Weak transcription	Liver	Liver
24	chr11:70848000-70850800	Weak transcription	Stomach Mucosa	stomach

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