Variant report

Variant	rs72957682
Chromosome Location	chr11:70850668-70850669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11232176	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs35467939	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70800600-70850800	Weak transcription	Right Atrium	heart
2	chr11:70824000-70861600	Weak transcription	A549	lung
3	chr11:70827400-70851200	Weak transcription	Placenta	Placenta
4	chr11:70832200-70860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:70832200-70863600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:70832200-70864400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:70841200-70857400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:70841800-70851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:70842400-70860600	Weak transcription	Fetal Intestine Large	intestine
10	chr11:70842600-70851000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:70842600-70860800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:70843200-70856800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:70843400-70857200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:70846000-70852800	Strong transcription	HepG2	liver
15	chr11:70847200-70850800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:70847200-70851800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:70848000-70850800	Weak transcription	Stomach Mucosa	stomach
18	chr11:70848400-70852400	Strong transcription	Fetal Intestine Small	intestine
19	chr11:70848800-70852000	Enhancers	Brain Anterior Caudate	brain
20	chr11:70849000-70850800	Weak transcription	Gastric	stomach
21	chr11:70849600-70852200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:70849800-70851200	Enhancers	Brain Cingulate Gyrus	brain
23	chr11:70849800-70851600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:70849800-70851800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:70849800-70852000	Enhancers	Fetal Muscle Leg	muscle
26	chr11:70849800-70852200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr11:70849800-70852200	Enhancers	Brain Angular Gyrus	brain
28	chr11:70849800-70852200	Enhancers	Brain Germinal Matrix	brain
29	chr11:70849800-70852200	Enhancers	Brain Hippocampus Middle	brain
30	chr11:70849800-70852200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:70849800-70852200	Enhancers	Brain Substantia Nigra	brain
32	chr11:70850000-70851000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr11:70850000-70851200	Enhancers	Osteobl	bone
34	chr11:70850000-70851400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr11:70850000-70851600	Enhancers	Fetal Brain Male	brain
36	chr11:70850000-70851600	Enhancers	Fetal Lung	lung
37	chr11:70850000-70852000	Enhancers	HSMM	muscle
38	chr11:70850000-70852200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
39	chr11:70850200-70850800	Weak transcription	Fetal Stomach	stomach
40	chr11:70850200-70850800	Weak transcription	HSMMtube	muscle
41	chr11:70850200-70851400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:70850400-70852000	Enhancers	Liver	Liver
43	chr11:70850400-70852200	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr11:70850400-70852400	Enhancers	Pancreas	Pancrea
45	chr11:70850600-70851200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr11:70850600-70851400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr11:70850600-70851600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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