Variant report
| Variant | rs72958632 |
|---|---|
| Chromosome Location | chr6:101800608-101800609 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:101798733..101801184-chr6:101804475..101806686,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10457930 | 1.00[ASN][1000 genomes] |
| rs12208565 | 1.00[ASN][1000 genomes] |
| rs1222375 | 1.00[ASN][1000 genomes] |
| rs2254178 | 1.00[ASN][1000 genomes] |
| rs2399557 | 1.00[ASN][1000 genomes] |
| rs2579929 | 1.00[ASN][1000 genomes] |
| rs2764271 | 1.00[ASN][1000 genomes] |
| rs2787573 | 1.00[ASN][1000 genomes] |
| rs2852497 | 1.00[ASN][1000 genomes] |
| rs2852505 | 1.00[ASN][1000 genomes] |
| rs2852510 | 1.00[ASN][1000 genomes] |
| rs2852513 | 1.00[ASN][1000 genomes] |
| rs2852514 | 1.00[ASN][1000 genomes] |
| rs496596 | 1.00[ASN][1000 genomes] |
| rs503387 | 1.00[ASN][1000 genomes] |
| rs570556 | 1.00[ASN][1000 genomes] |
| rs626262 | 1.00[ASN][1000 genomes] |
| rs632956 | 1.00[ASN][1000 genomes] |
| rs643101 | 1.00[ASN][1000 genomes] |
| rs658318 | 1.00[ASN][1000 genomes] |
| rs661064 | 1.00[ASN][1000 genomes] |
| rs687497 | 1.00[ASN][1000 genomes] |
| rs697438 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1020400 | chr6:101172705-101981665 | Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv538390 | chr6:101172705-101981665 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:101800000-101805400 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
