Variant report

Variant	rs72958718
Chromosome Location	chr1:92678543-92678544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11166390	1.00[AMR][1000 genomes]
rs11166543	1.00[AMR][1000 genomes]
rs12057715	1.00[AMR][1000 genomes]
rs12059439	1.00[AMR][1000 genomes]
rs12067302	1.00[AMR][1000 genomes]
rs12069690	1.00[AMR][1000 genomes]
rs12076399	1.00[AMR][1000 genomes]
rs12086354	1.00[AMR][1000 genomes]
rs12088142	1.00[AMR][1000 genomes]
rs12088549	1.00[AMR][1000 genomes]
rs12091427	1.00[AMR][1000 genomes]
rs12092747	1.00[AMR][1000 genomes]
rs12093038	1.00[AMR][1000 genomes]
rs1487538	1.00[AMR][1000 genomes]
rs17131614	1.00[AMR][1000 genomes]
rs17131625	1.00[AMR][1000 genomes]
rs35166258	1.00[AMR][1000 genomes]
rs59366523	1.00[AMR][1000 genomes]
rs6657876	1.00[AMR][1000 genomes]
rs6679077	1.00[AMR][1000 genomes]
rs72958705	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958765	1.00[AMR][1000 genomes]
rs72958786	1.00[AMR][1000 genomes]
rs72958791	1.00[AMR][1000 genomes]
rs72960809	1.00[AMR][1000 genomes]
rs72960817	1.00[AMR][1000 genomes]
rs72960824	1.00[AMR][1000 genomes]
rs7512045	1.00[AMR][1000 genomes]
rs9660398	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv530438	chr1:92091957-92827760	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv530046	chr1:92277460-92799794	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv871508	chr1:92478130-92781579	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv830592	chr1:92669282-92805629	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92677800-92678600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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