Variant report

Variant	rs72959610
Chromosome Location	chr6:74990143-74990144
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:88)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:88 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:74990100-74990250	HPAF	blood vessel:	n/a	n/a
2	CTCF	chr6:74990107-74990282	HepG2	liver:	n/a	n/a
3	CTCF	chr6:74990100-74990250	AoAF	blood vessel:	n/a	n/a
4	RAD21	chr6:74989974-74990392	ECC-1	luminal epithelium:	n/a	n/a
5	CTCF	chr6:74990120-74990270	AG10803	skin:	n/a	n/a
6	CTCF	chr6:74990120-74990270	K562	blood:	n/a	n/a
7	RAD21	chr6:74990075-74990332	MCF-7	breast:	n/a	n/a
8	CTCF	chr6:74990140-74990290	AG04450	lung:	n/a	n/a
9	CTCF	chr6:74990120-74990270	MCF-7	breast:	n/a	n/a
10	CTCF	chr6:74990024-74990288	IMR90	lung:	n/a	n/a
11	CTCF	chr6:74990100-74990250	BJ	skin:	n/a	n/a
12	CTCF	chr6:74990140-74990290	AG09309	skin:	n/a	n/a
13	CTCF	chr6:74990107-74990249	HepG2	liver:	n/a	n/a
14	CTCF	chr6:74990140-74990290	HCT-116	colon:	n/a	n/a
15	CTCF	chr6:74990120-74990270	HMEC	breast:	n/a	n/a
16	RAD21	chr6:74990058-74990385	A549	lung:	n/a	n/a
17	CTCF	chr6:74989994-74990386	H1-hESC	embryonic stem cell:	n/a	n/a
18	CTCF	chr6:74990080-74990230	HepG2	liver:	n/a	n/a
19	CTCF	chr6:74990120-74990270	NHLF	lung:	n/a	n/a
20	CTCF	chr6:74990100-74990250	Hela-S3	cervix:	n/a	n/a
21	CTCF	chr6:74990094-74990281	HUVEC	blood vessel:	n/a	n/a
22	RAD21	chr6:74990066-74990340	HepG2	liver:	n/a	n/a
23	CTCF	chr6:74990100-74990250	HMF	breast:	n/a	n/a
24	CTCF	chr6:74990110-74990292	MCF-7	breast:	n/a	n/a
25	RAD21	chr6:74990074-74990237	SK-N-SH_RA	brain:	n/a	n/a
26	CTCF	chr6:74990080-74990230	GM12872	blood:	n/a	n/a
27	CTCF	chr6:74990140-74990290	RPTEC	kidney:	n/a	n/a
28	CTCF	chr6:74990040-74990190	MCF-7	breast:	n/a	n/a
29	CTCF	chr6:74990122-74990266	ProgFib	skin:	n/a	n/a
30	CTCF	chr6:74990140-74990290	NHDF-neo	bronchial:	n/a	n/a
31	CTCF	chr6:74990062-74990422	MCF-7	breast:	n/a	n/a
32	CTCF	chr6:74990135-74990271	Fibrobl	skin:	n/a	n/a
33	CTCF	chr6:74990100-74990250	HBMEC	blood vessel:	n/a	n/a
34	RAD21	chr6:74989947-74990380	HCT-116	colon:	n/a	n/a
35	CTCF	chr6:74990128-74990263	A549	lung:	n/a	n/a
36	CTCF	chr6:74990080-74990230	HCT-116	colon:	n/a	n/a
37	RAD21	chr6:74989952-74990382	MCF-7	breast:	n/a	n/a
38	CTCF	chr6:74990060-74990210	HPAF	blood vessel:	n/a	n/a
39	RAD21	chr6:74990120-74990289	IMR90	lung:	n/a	n/a
40	CTCF	chr6:74990100-74990250	HFF	foreskin:	n/a	n/a
41	CTCF	chr6:74990100-74990250	HAc	cerebellar:	n/a	n/a
42	CTCF	chr6:74990060-74990210	HMF	breast:	n/a	n/a
43	CTCF	chr6:74990122-74990276	LNCaP	prostate:	n/a	n/a
44	CTCF	chr6:74990080-74990230	A549	lung:	n/a	n/a
45	CTCF	chr6:74990100-74990250	NHEK	skin:	n/a	n/a
46	CTCF	chr6:74990060-74990210	AoAF	blood vessel:	n/a	n/a
47	CTCF	chr6:74990020-74990170	GM12873	blood:	n/a	n/a
48	CTCF	chr6:74990120-74990270	HRPEpiC	eye:	n/a	n/a
49	CTCF	chr6:74990080-74990230	HRE	kidney:	n/a	n/a
50	CTCF	chr6:74990140-74990290	NHEK	skin:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000217178	TF binding region

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1038684	0.86[EUR][1000 genomes]
rs10485385	0.86[EUR][1000 genomes]
rs10485386	0.86[EUR][1000 genomes]
rs10485387	0.86[EUR][1000 genomes]
rs10805997	0.86[EUR][1000 genomes]
rs12175094	0.86[EUR][1000 genomes]
rs12523779	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12524014	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525068	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12527310	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528947	0.98[EUR][1000 genomes]
rs1387418	0.86[EUR][1000 genomes]
rs1387419	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1387420	0.86[EUR][1000 genomes]
rs1416395	0.85[EUR][1000 genomes]
rs1416396	0.85[EUR][1000 genomes]
rs1416397	0.83[EUR][1000 genomes]
rs1416398	0.86[EUR][1000 genomes]
rs1489380	0.86[EUR][1000 genomes]
rs1552564	0.86[EUR][1000 genomes]
rs1552565	0.85[EUR][1000 genomes]
rs16884558	0.86[EUR][1000 genomes]
rs16884590	0.86[EUR][1000 genomes]
rs1844317	0.86[EUR][1000 genomes]
rs1953176	0.86[EUR][1000 genomes]
rs2029393	0.86[EUR][1000 genomes]
rs2029394	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2068742	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2200809	0.86[EUR][1000 genomes]
rs34261519	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4120421	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4706577	0.86[EUR][1000 genomes]
rs4706578	0.86[EUR][1000 genomes]
rs4708141	0.86[EUR][1000 genomes]
rs4708142	0.86[EUR][1000 genomes]
rs60997457	0.90[EUR][1000 genomes]
rs67514214	0.90[EUR][1000 genomes]
rs6907419	0.88[EUR][1000 genomes]
rs72950553	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72953713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72953738	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72953745	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72954310	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72959903	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964264	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72964267	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72967270	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73460274	0.90[EUR][1000 genomes]
rs7746000	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7752957	0.86[EUR][1000 genomes]
rs7776197	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9293958	0.85[EUR][1000 genomes]
rs9293959	0.86[EUR][1000 genomes]
rs9293960	0.86[EUR][1000 genomes]
rs9293962	0.86[EUR][1000 genomes]
rs9293964	0.86[EUR][1000 genomes]
rs9341460	0.88[EUR][1000 genomes]
rs9341461	0.90[EUR][1000 genomes]
rs9343123	0.86[EUR][1000 genomes]
rs9343127	0.90[EUR][1000 genomes]
rs9343128	0.90[EUR][1000 genomes]
rs9343138	0.88[EUR][1000 genomes]
rs9352083	0.86[EUR][1000 genomes]
rs9352084	0.86[EUR][1000 genomes]
rs9352085	0.86[EUR][1000 genomes]
rs9352087	0.86[EUR][1000 genomes]
rs9359076	0.86[EUR][1000 genomes]
rs9360757	0.86[EUR][1000 genomes]
rs9360759	0.86[EUR][1000 genomes]
rs9360761	0.86[EUR][1000 genomes]
rs9360763	0.86[EUR][1000 genomes]
rs9360766	0.91[EUR][1000 genomes]
rs9360769	0.90[EUR][1000 genomes]
rs9360770	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2829863	chr6:74976178-75040446	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74988000-74992600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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