Variant report

Variant	rs72960832
Chromosome Location	chr3:120197151-120197152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:120194633..120197290-chr3:120209901..120211430,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1520877	0.82[AFR][1000 genomes]
rs1520879	0.86[AFR][1000 genomes]
rs1520880	0.80[AFR][1000 genomes]
rs16831308	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831321	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831328	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16831400	1.00[ASN][1000 genomes]
rs16831487	1.00[ASN][1000 genomes]
rs16831491	1.00[ASN][1000 genomes]
rs16831500	1.00[ASN][1000 genomes]
rs16831503	1.00[ASN][1000 genomes]
rs17140276	1.00[ASN][1000 genomes]
rs17140280	1.00[ASN][1000 genomes]
rs57460775	0.81[AFR][1000 genomes]
rs6770836	1.00[ASN][1000 genomes]
rs7633287	1.00[ASN][1000 genomes]
rs9843734	0.83[AFR][1000 genomes]
rs9849292	0.86[AFR][1000 genomes]
rs985190	1.00[ASN][1000 genomes]
rs9868131	0.84[AFR][1000 genomes]
rs9881574	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007557	chr3:119892894-120764353	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv536706	chr3:119892894-120764353	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv1012127	chr3:120015620-120272893	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv536707	chr3:120015620-120272893	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv1006428	chr3:120015620-120421982	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv3369381	chr3:120066425-120425510	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	esv3350409	chr3:120066445-120425480	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:120193800-120205800	Weak transcription	HSMM	muscle
2	chr3:120195200-120198000	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:120195600-120197400	Enhancers	Fetal Heart	heart
4	chr3:120196000-120198000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr3:120196600-120198200	Enhancers	Colon Smooth Muscle	Colon
6	chr3:120196800-120203000	Weak transcription	Left Ventricle	heart
7	chr3:120196800-120205800	Weak transcription	Fetal Stomach	stomach
8	chr3:120197000-120197200	Enhancers	Right Ventricle	heart
9	chr3:120197000-120197200	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr3:120197000-120197400	Enhancers	Duodenum Smooth Muscle	Duodenum

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