The 2.0 version of rSNPBase

Variant report

Variant rs72962659
Chromosome Location chr1:92945851-92945852
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:92925600-92946000 Weak transcription Right Atrium heart
2 chr1:92940000-92947400 Genic enhancers Primary T cells fromperipheralblood blood
3 chr1:92941800-92946000 Weak transcription Gastric stomach
4 chr1:92942600-92947400 Weak transcription Primary T regulatory cells fromperipheralblood blood
5 chr1:92942600-92947600 Weak transcription Primary monocytes fromperipheralblood blood
6 chr1:92942800-92947200 Weak transcription Primary B cells from cord blood blood
7 chr1:92942800-92947600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr1:92943200-92947000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
9 chr1:92943200-92949200 Transcr. at gene 5' and 3' Dnd41 blood
10 chr1:92943400-92949200 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
11 chr1:92943600-92946000 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
12 chr1:92943800-92946600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
13 chr1:92943800-92946800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
14 chr1:92944000-92946000 Genic enhancers Primary T helper cells PMA-I stimulated --
15 chr1:92944000-92946800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr1:92944200-92946800 Strong transcription Primary hematopoietic stem cells blood
17 chr1:92944400-92946000 Strong transcription Primary T cells from cord blood blood
18 chr1:92944400-92946800 ZNF genes & repeats Spleen Spleen
19 chr1:92944800-92946800 Strong transcription Primary T helper naive cells fromperipheralblood blood
20 chr1:92945200-92946800 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
21 chr1:92945200-92947400 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr1:92945200-92947600 Weak transcription GM12878-XiMat blood
23 chr1:92945200-92949000 Weak transcription HepG2 liver
24 chr1:92945600-92946200 Bivalent Enhancer Fetal Intestine Large intestine
25 chr1:92945600-92946400 Flanking Bivalent TSS/Enh HUES6 Cell Line embryonic stem cell
26 chr1:92945600-92946600 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
27 chr1:92945600-92946600 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
28 chr1:92945600-92947000 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
29 chr1:92945600-92947000 Genic enhancers Pancreas Pancrea
30 chr1:92945600-92947200 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
31 chr1:92945600-92947200 Bivalent Enhancer Esophagus oesophagus
32 chr1:92945600-92947200 Bivalent Enhancer Lung lung
33 chr1:92945600-92947400 Flanking Bivalent TSS/Enh H1 Cell Line embryonic stem cell
34 chr1:92945600-92947600 Transcr. at gene 5' and 3' Thymus Thymus
35 chr1:92945600-92948000 Bivalent Enhancer Fetal Lung lung
36 chr1:92945600-92952200 Bivalent Enhancer H9 Derived Neuron Cultured Cells ES cell derived
37 chr1:92945600-92952600 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
38 chr1:92945600-92952800 Bivalent/Poised TSS H9 Cell Line embryonic stem cell
39 chr1:92945800-92946000 Bivalent Enhancer hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr1:92945800-92946000 Bivalent Enhancer iPS-20b Cell Line embryonic stem cell
41 chr1:92945800-92946000 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin02 Skin
42 chr1:92945800-92946000 Bivalent/Poised TSS Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:92945800-92946000 Bivalent Enhancer Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr1:92945800-92946000 Bivalent Enhancer Brain Germinal Matrix brain
45 chr1:92945800-92946000 Bivalent Enhancer Fetal Intestine Small intestine
46 chr1:92945800-92946000 Bivalent Enhancer Right Ventricle heart
47 chr1:92945800-92946200 Bivalent Enhancer H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr1:92945800-92946200 Bivalent Enhancer Cortex derived primary cultured neurospheres brain
49 chr1:92945800-92946200 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
50 chr1:92945800-92946400 Flanking Bivalent TSS/Enh iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015