Variant report

Variant	rs72964344
Chromosome Location	chr2:128070548-128070549
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10169028	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10178188	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10195774	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10206392	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10211382	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10221754	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439213	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10439214	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10451530	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1128974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1129121	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13385611	0.80[ASN][1000 genomes]
rs13406313	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13421256	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13424947	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13429050	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13431911	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1607437	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271026	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755310	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4150448	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150487	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4150507	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4150512	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4150515	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55826634	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56276844	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57011781	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57547812	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57878090	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59283013	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59306090	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6710541	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6711086	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727155	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740067	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6740368	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6743815	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6750648	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72956480	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72956485	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964335	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964338	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964352	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72964361	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7564189	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7584829	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7586961	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs878461	0.90[EUR][1000 genomes]
rs908787	0.90[EUR][1000 genomes]
rs9808452	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128052400-128070800	Weak transcription	Colonic Mucosa	Colon
2	chr2:128052400-128071200	Weak transcription	Fetal Brain Male	brain
3	chr2:128052800-128070800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:128052800-128071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:128052800-128071800	Weak transcription	NHLF	lung
6	chr2:128053000-128070800	Weak transcription	K562	blood
7	chr2:128053000-128071600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:128058600-128085600	Strong transcription	Primary B cells from cord blood	blood
9	chr2:128059400-128082800	Strong transcription	Liver	Liver
10	chr2:128059400-128109600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:128059800-128093000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:128061200-128077600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:128061600-128098200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr2:128061800-128096800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:128062000-128077600	Strong transcription	Fetal Intestine Large	intestine
16	chr2:128062000-128077800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:128062000-128083200	Strong transcription	Primary T cells from cord blood	blood
18	chr2:128062000-128085000	Strong transcription	Duodenum Mucosa	Duodenum
19	chr2:128062000-128086600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr2:128062400-128070800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:128062400-128094000	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr2:128062600-128071800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr2:128062600-128077600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr2:128062600-128077800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:128062600-128077800	Strong transcription	Dnd41	blood
26	chr2:128062600-128078000	Strong transcription	Fetal Thymus	thymus
27	chr2:128062600-128083400	Strong transcription	Fetal Muscle Trunk	muscle
28	chr2:128062600-128083400	Strong transcription	Thymus	Thymus
29	chr2:128062600-128089400	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr2:128062800-128077800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr2:128062800-128098000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr2:128063000-128076200	Strong transcription	Brain Anterior Caudate	brain
33	chr2:128063000-128076800	Strong transcription	Osteobl	bone
34	chr2:128063000-128077400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr2:128063000-128078400	Strong transcription	Adipose Nuclei	Adipose
36	chr2:128063000-128080200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:128063000-128089200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr2:128063200-128076600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr2:128063200-128080200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr2:128063400-128077800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr2:128063400-128077800	Strong transcription	Fetal Lung	lung
42	chr2:128063400-128084800	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr2:128063400-128098400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:128063600-128078000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr2:128063600-128081200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr2:128063600-128083400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr2:128063600-128091800	Strong transcription	Placenta	Placenta
48	chr2:128063800-128072400	Strong transcription	Brain Substantia Nigra	brain
49	chr2:128063800-128075400	Strong transcription	Stomach Smooth Muscle	stomach
50	chr2:128063800-128077200	Strong transcription	A549	lung

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