Variant report

Variant	rs72967286
Chromosome Location	chr6:75024457-75024458
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11752920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11754468	0.86[EUR][1000 genomes]
rs11758445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11759133	0.86[EUR][1000 genomes]
rs16884519	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16884624	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16884690	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16884715	1.00[AFR][1000 genomes]
rs16884731	1.00[AFR][1000 genomes]
rs16884733	1.00[AFR][1000 genomes]
rs16884746	1.00[AFR][1000 genomes]
rs16884854	1.00[AFR][1000 genomes]
rs1817735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3846756	1.00[AFR][1000 genomes]
rs3898077	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4385272	1.00[AFR][1000 genomes]
rs4441922	1.00[AFR][1000 genomes]
rs55768795	0.81[EUR][1000 genomes]
rs55784940	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55962148	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56004196	0.85[AMR][1000 genomes]
rs56020332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56168817	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs56206543	1.00[AFR][1000 genomes]
rs56232317	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67076726	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6926572	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72950543	1.00[AMR][1000 genomes]
rs72950546	1.00[AMR][1000 genomes]
rs72953763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72954314	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72957983	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72957986	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72957999	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72959615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72959617	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72959619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72964214	0.85[AMR][1000 genomes]
rs72967265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72967284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72967291	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72969227	1.00[AFR][1000 genomes]
rs72969239	1.00[AFR][1000 genomes]
rs72969247	1.00[AFR][1000 genomes]
rs72969251	1.00[AFR][1000 genomes]
rs7755776	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7776273	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9359077	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2829863	chr6:74976178-75040446	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886165	chr6:74981125-75070742	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75024200-75024600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:75024200-75025000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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