Variant report
| Variant | rs72968097 |
|---|---|
| Chromosome Location | chr1:93354804-93354805 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:93350132..93352142-chr1:93353157..93356031,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11164793 | 1.00[EUR][1000 genomes] |
| rs11164794 | 1.00[EUR][1000 genomes] |
| rs11164795 | 1.00[EUR][1000 genomes] |
| rs11164797 | 1.00[EUR][1000 genomes] |
| rs11164802 | 1.00[EUR][1000 genomes] |
| rs11164817 | 1.00[EUR][1000 genomes] |
| rs11164824 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11164834 | 1.00[EUR][1000 genomes] |
| rs12059319 | 1.00[EUR][1000 genomes] |
| rs12061768 | 1.00[EUR][1000 genomes] |
| rs12064459 | 1.00[EUR][1000 genomes] |
| rs12069560 | 1.00[EUR][1000 genomes] |
| rs12074805 | 1.00[EUR][1000 genomes] |
| rs12077455 | 1.00[EUR][1000 genomes] |
| rs12078923 | 1.00[EUR][1000 genomes] |
| rs12084062 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12091803 | 1.00[EUR][1000 genomes] |
| rs12092810 | 1.00[EUR][1000 genomes] |
| rs17271666 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57115390 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60025932 | 1.00[EUR][1000 genomes] |
| rs60986131 | 1.00[EUR][1000 genomes] |
| rs6700752 | 1.00[EUR][1000 genomes] |
| rs72955313 | 1.00[EUR][1000 genomes] |
| rs72955332 | 1.00[EUR][1000 genomes] |
| rs72968072 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72968080 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72969937 | 1.00[EUR][1000 genomes] |
| rs72969957 | 1.00[EUR][1000 genomes] |
| rs72969976 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008602 | chr1:93176811-93640808 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 51 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:93350000-93366400 | Weak transcription | Thymus | Thymus |
