Variant report
| Variant | rs72969227 |
|---|---|
| Chromosome Location | chr6:75055450-75055451 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:75053870..75055720-chr6:75913011..75915599,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111799 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs16884715 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16884731 | 1.00[AFR][1000 genomes];0.98[EUR][1000 genomes] |
| rs16884733 | 1.00[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs16884746 | 1.00[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs16884854 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3846756 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs41367946 | 0.88[EUR][1000 genomes] |
| rs4385272 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4441922 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56020332 | 1.00[AFR][1000 genomes] |
| rs56168817 | 1.00[AFR][1000 genomes] |
| rs56206543 | 1.00[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72959619 | 1.00[AFR][1000 genomes] |
| rs72967284 | 1.00[AFR][1000 genomes] |
| rs72967286 | 1.00[AFR][1000 genomes] |
| rs72967291 | 1.00[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72969239 | 1.00[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72969247 | 1.00[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72969251 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758061 | chr6:74961996-75128165 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv2759442 | chr6:74961996-75162222 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv886165 | chr6:74981125-75070742 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv35015 | chr6:75031337-75154143 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
