Variant report

Variant	rs72970065
Chromosome Location	chr4:86794249-86794250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72970062	1.00[ASN][1000 genomes]
rs72970067	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72970086	1.00[ASN][1000 genomes]
rs72970089	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830000	chr4:86745341-86909059	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879519	chr4:86786204-86871282	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86750000-86809200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86779800-86800200	Weak transcription	Primary B cells from cord blood	blood
3	chr4:86788000-86795400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:86788000-86795400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:86788000-86797000	Weak transcription	Ovary	ovary
6	chr4:86788000-86804000	Weak transcription	Aorta	Aorta
7	chr4:86788000-86807400	Weak transcription	Left Ventricle	heart
8	chr4:86788000-86810800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr4:86788000-86812400	Weak transcription	HSMM	muscle
10	chr4:86788200-86812000	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:86788600-86794600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr4:86790800-86835400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:86791000-86803600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:86791000-86804200	Weak transcription	HSMMtube	muscle
15	chr4:86791200-86795600	Weak transcription	Small Intestine	intestine
16	chr4:86791200-86844400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:86791600-86794600	Weak transcription	Fetal Kidney	kidney
18	chr4:86791600-86802000	Weak transcription	NHDF-Ad	bronchial
19	chr4:86791800-86795400	Weak transcription	Stomach Mucosa	stomach
20	chr4:86793000-86794600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr4:86793800-86794800	Enhancers	Pancreas	Pancrea
22	chr4:86794200-86794400	Strong transcription	HUVEC	blood vessel
23	chr4:86794200-86794600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr4:86794200-86794800	Enhancers	Psoas Muscle	Psoas

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