Variant report

Variant	rs72970303
Chromosome Location	chr3:119144619-119144620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs3968056	1.00[AMR][1000 genomes]
rs56659708	1.00[AMR][1000 genomes]
rs61324063	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61744178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61744411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61747387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6766961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6772192	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6781905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6782742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72655924	1.00[AMR][1000 genomes]
rs72956724	1.00[AMR][1000 genomes]
rs72966441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72966442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72968480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72968490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72968497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72968499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72970308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72970314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72970322	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7648461	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119080000-119145600	Weak transcription	Fetal Kidney	kidney
2	chr3:119112000-119147400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:119121200-119150000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:119133800-119147400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:119134200-119148800	Weak transcription	Pancreas	Pancrea
6	chr3:119134600-119147600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:119134800-119147400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:119135000-119147400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:119135000-119147600	Weak transcription	Fetal Thymus	thymus
10	chr3:119135000-119147800	Weak transcription	Placenta	Placenta
11	chr3:119135000-119148000	Weak transcription	Aorta	Aorta
12	chr3:119135200-119145000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:119135200-119149800	Weak transcription	Gastric	stomach
14	chr3:119135400-119145600	Weak transcription	HUVEC	blood vessel
15	chr3:119135400-119147800	Weak transcription	Ovary	ovary
16	chr3:119135400-119148000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:119135400-119150000	Weak transcription	Spleen	Spleen
18	chr3:119136800-119145600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:119137400-119145400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:119137400-119145400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:119137400-119147800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:119137800-119146800	Weak transcription	Osteobl	bone
23	chr3:119138000-119148400	Weak transcription	Fetal Stomach	stomach
24	chr3:119138000-119152400	Weak transcription	Lung	lung
25	chr3:119139400-119147000	Weak transcription	Left Ventricle	heart
26	chr3:119142400-119150800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:119144200-119145200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
28	chr3:119144400-119150400	ZNF genes & repeats	Liver	Liver
29	chr3:119144600-119152000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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