Variant report

Variant	rs72972875
Chromosome Location	chr4:86619371-86619372
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10516753	1.00[AMR][1000 genomes]
rs10516754	1.00[AMR][1000 genomes]
rs11931466	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1482082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17010594	1.00[AMR][1000 genomes]
rs17010650	1.00[AMR][1000 genomes]
rs17010773	1.00[AMR][1000 genomes]
rs17010775	1.00[AMR][1000 genomes]
rs17010777	1.00[AMR][1000 genomes]
rs1994082	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6823467	1.00[AMR][1000 genomes]
rs6841314	1.00[AMR][1000 genomes]
rs6851145	1.00[AMR][1000 genomes]
rs72972865	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7656548	1.00[AMR][1000 genomes]
rs7684018	1.00[AMR][1000 genomes]
rs7695679	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86591400-86619400	Weak transcription	Pancreas	Pancrea
2	chr4:86604200-86624000	Weak transcription	HSMM	muscle
3	chr4:86615000-86624200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:86615000-86624600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:86617600-86624000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr4:86617800-86620400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:86618200-86621800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:86618200-86622800	Weak transcription	NHDF-Ad	bronchial
9	chr4:86618600-86619400	Enhancers	Stomach Mucosa	stomach
10	chr4:86618600-86625200	Enhancers	Primary B cells from peripheral blood	blood
11	chr4:86618800-86619600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr4:86618800-86620400	Genic enhancers	Primary B cells from cord blood	blood
13	chr4:86619200-86624600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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