Variant report

Variant	rs72986056
Chromosome Location	chr3:54308721-54308722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55906507	1.00[AMR][1000 genomes]
rs57724087	1.00[AMR][1000 genomes]
rs58237311	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58845270	1.00[AMR][1000 genomes]
rs59207127	1.00[AMR][1000 genomes]
rs59232971	1.00[AMR][1000 genomes]
rs72986095	1.00[AMR][1000 genomes]
rs72988009	1.00[AMR][1000 genomes]
rs73841973	1.00[AMR][1000 genomes]
rs73841976	1.00[AMR][1000 genomes]
rs73841977	1.00[AMR][1000 genomes]
rs73841978	1.00[AMR][1000 genomes]
rs73841979	1.00[AMR][1000 genomes]
rs73841980	1.00[AMR][1000 genomes]
rs73841981	1.00[AMR][1000 genomes]
rs73841983	1.00[AMR][1000 genomes]
rs73841984	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1014157	chr3:54168755-54332321	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv876806	chr3:54256648-54330010	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54295000-54308800	Weak transcription	Psoas Muscle	Psoas
2	chr3:54296400-54309000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:54301000-54310400	Weak transcription	Aorta	Aorta
4	chr3:54307800-54309200	Enhancers	Hela-S3	cervix
5	chr3:54308400-54309200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:54308400-54309200	Enhancers	Left Ventricle	heart
7	chr3:54308600-54309000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:54308600-54309000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:54308600-54309200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:54308600-54309200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:54308600-54309200	Enhancers	Right Atrium	heart
12	chr3:54308600-54309400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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