Variant report

Variant	rs72988009
Chromosome Location	chr3:54346600-54346601
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55906507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57724087	1.00[AMR][1000 genomes]
rs58237311	1.00[AMR][1000 genomes]
rs58845270	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59207127	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59232971	1.00[AMR][1000 genomes]
rs72986056	1.00[AMR][1000 genomes]
rs72986091	0.92[AFR][1000 genomes]
rs72986095	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73841973	1.00[AMR][1000 genomes]
rs73841976	1.00[AMR][1000 genomes]
rs73841977	1.00[AMR][1000 genomes]
rs73841978	1.00[AMR][1000 genomes]
rs73841979	1.00[AMR][1000 genomes]
rs73841980	1.00[AMR][1000 genomes]
rs73841981	1.00[AMR][1000 genomes]
rs73841983	1.00[AMR][1000 genomes]
rs73841984	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54344000-54347600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:54344000-54360800	Weak transcription	Psoas Muscle	Psoas
3	chr3:54345200-54347600	Enhancers	Fetal Brain Male	brain
4	chr3:54345400-54346800	Enhancers	Fetal Stomach	stomach
5	chr3:54345400-54347400	Enhancers	Fetal Lung	lung
6	chr3:54345600-54349400	Weak transcription	Ovary	ovary
7	chr3:54346400-54348800	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links