Variant report

Variant	rs72991923
Chromosome Location	chr6:133629339-133629340
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11154720	1.00[ASN][1000 genomes]
rs13194374	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212740	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218103	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13218570	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062322	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17062356	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17242354	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34018528	1.00[ASN][1000 genomes]
rs34353709	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34395775	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34585135	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34804693	1.00[ASN][1000 genomes]
rs34895585	1.00[ASN][1000 genomes]
rs35350600	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35677071	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58707513	1.00[ASN][1000 genomes]
rs6569875	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66480937	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67684955	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923945	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926046	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940715	1.00[ASN][1000 genomes]
rs71574647	1.00[ASN][1000 genomes]
rs71574648	1.00[ASN][1000 genomes]
rs71574649	1.00[ASN][1000 genomes]
rs72991903	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993984	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993996	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747163	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747638	1.00[ASN][1000 genomes]
rs9483576	0.82[EUR][1000 genomes]
rs9493599	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv886679	chr6:133578733-133635272	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133613000-133630600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
3	chr6:133623200-133636200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:133627000-133633200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:133627400-133633200	Weak transcription	Psoas Muscle	Psoas
6	chr6:133627600-133637000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:133628200-133629800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:133628400-133630400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:133628800-133630600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:133629000-133629400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:133629000-133630600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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