Variant report

Variant	rs72994549
Chromosome Location	chr3:142574123-142574124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142572556..142576280-chr3:142576710..142580010,5	K562	blood:
2	chr3:142572989..142577563-chr3:142579302..142583186,5	MCF-7	breast:
3	chr3:142569424..142571817-chr3:142572523..142574368,2	K562	blood:
4	chr3:142572440..142574458-chr3:142574560..142576431,2	MCF-7	breast:
5	chr3:142572203..142576280-chr3:142576710..142581355,6	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs3732742	1.00[AMR][1000 genomes]
rs6782209	1.00[AMR][1000 genomes]
rs72990707	1.00[AMR][1000 genomes]
rs72990714	1.00[AMR][1000 genomes]
rs72990829	1.00[AMR][1000 genomes]
rs72993783	1.00[AMR][1000 genomes]
rs72999509	1.00[AMR][1000 genomes]
rs72999535	1.00[AMR][1000 genomes]
rs73000180	1.00[AMR][1000 genomes]
rs73002059	1.00[AMR][1000 genomes]
rs73003356	1.00[AMR][1000 genomes]
rs73003379	1.00[AMR][1000 genomes]
rs73005387	1.00[AMR][1000 genomes]
rs7627274	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142557200-142580600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:142565200-142582200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:142569800-142574600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:142570200-142575200	Weak transcription	K562	blood
5	chr3:142570400-142580400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:142572400-142574200	Weak transcription	Right Atrium	heart
7	chr3:142572800-142580000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:142572800-142596200	Weak transcription	Aorta	Aorta
9	chr3:142573000-142574400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:142573000-142574400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:142573000-142574400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:142573000-142574600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:142573000-142574800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:142573000-142574800	Weak transcription	Left Ventricle	heart
15	chr3:142573000-142577000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:142573000-142580600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:142573000-142582000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:142573000-142582400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:142573200-142574200	Weak transcription	Fetal Lung	lung
20	chr3:142573200-142574400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:142573200-142574400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:142573200-142574600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr3:142573200-142574600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr3:142573200-142574600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:142573200-142575800	Weak transcription	A549	lung
26	chr3:142573200-142576000	Weak transcription	NHEK	skin
27	chr3:142573200-142579600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:142573200-142581800	Weak transcription	Hela-S3	cervix
29	chr3:142573200-142582000	Weak transcription	Adipose Nuclei	Adipose
30	chr3:142573400-142582000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:142573800-142582000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr3:142574000-142574600	Weak transcription	Right Ventricle	heart
33	chr3:142574000-142576000	Weak transcription	Liver	Liver

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