Variant report

Variant	rs72997837
Chromosome Location	chr3:143153022-143153023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73868713	1.00[AMR][1000 genomes]
rs7635303	1.00[AMR][1000 genomes]
rs7650491	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1011088	chr3:143135891-143163169	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143143200-143161600	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143147600-143164200	Enhancers	Fetal Thymus	thymus
3	chr3:143147800-143155600	Weak transcription	Thymus	Thymus
4	chr3:143149200-143154800	Weak transcription	NHLF	lung
5	chr3:143149400-143153600	Weak transcription	Lung	lung
6	chr3:143149600-143163600	Weak transcription	Primary B cells from cord blood	blood
7	chr3:143150000-143154400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:143150800-143154600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:143152000-143157400	Weak transcription	Dnd41	blood
10	chr3:143152000-143162200	Weak transcription	Adipose Nuclei	Adipose
11	chr3:143152600-143154800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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