Variant report

Variant	rs72999509
Chromosome Location	chr3:142640351-142640352
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3732742	1.00[AMR][1000 genomes]
rs6782209	1.00[AMR][1000 genomes]
rs72990707	1.00[AMR][1000 genomes]
rs72990714	1.00[AMR][1000 genomes]
rs72990829	1.00[AMR][1000 genomes]
rs72993783	1.00[AMR][1000 genomes]
rs72994549	1.00[AMR][1000 genomes]
rs72999535	1.00[AMR][1000 genomes]
rs73003356	1.00[AMR][1000 genomes]
rs73003379	1.00[AMR][1000 genomes]
rs73005387	1.00[AMR][1000 genomes]
rs7627274	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142639800-142641200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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