Variant report

Variant	rs72999535
Chromosome Location	chr3:142647911-142647912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142646642..142649526-chr3:142698075..142700491,2	K562	blood:
2	chr3:142605802..142607815-chr3:142647125..142649586,2	K562	blood:
3	chr3:142647321..142650179-chr3:142650476..142652282,2	K562	blood:
4	chr3:142646363..142649526-chr3:142696686..142700491,3	K562	blood:
5	chr3:142647631..142648220-chr3:142705617..142706573,2	MCF-7	breast:
6	chr3:142646198..142649635-chr3:142718631..142722027,3	K562	blood:
7	chr3:142644210..142646377-chr3:142646529..142649534,4	K562	blood:
8	chr3:142647689..142648573-chr3:142712288..142713030,2	MCF-7	breast:
9	chr3:142647658..142648658-chr3:142705658..142706609,3	K562	blood:
10	chr3:142646198..142649043-chr3:142718631..142721603,3	K562	blood:
11	chr3:142647858..142649587-chr3:142722010..142723590,2	K562	blood:
12	chr3:142637758..142639522-chr3:142646455..142648130,2	MCF-7	breast:
13	chr3:142647572..142650450-chr3:142712421..142714563,2	K562	blood:
14	chr3:142647753..142648651-chr3:142712531..142713417,3	MCF-7	breast:
15	chr3:142644725..142647304-chr3:142647371..142649534,2	K562	blood:
16	chr3:142647719..142648668-chr3:142712518..142713506,7	K562	blood:
17	chr3:142645933..142648284-chr3:142709421..142711755,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000268129	Chromatin interaction
ENSG00000163710	Chromatin interaction
ENSG00000163714	Chromatin interaction
ENSG00000243818	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3732742	1.00[AMR][1000 genomes]
rs6782209	1.00[AMR][1000 genomes]
rs72990707	1.00[AMR][1000 genomes]
rs72990714	1.00[AMR][1000 genomes]
rs72990829	1.00[AMR][1000 genomes]
rs72993783	1.00[AMR][1000 genomes]
rs72994549	1.00[AMR][1000 genomes]
rs72999509	1.00[AMR][1000 genomes]
rs73003356	1.00[AMR][1000 genomes]
rs73003379	1.00[AMR][1000 genomes]
rs73005387	1.00[AMR][1000 genomes]
rs7627274	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142645400-142648200	Flanking Active TSS	Liver	Liver
2	chr3:142647200-142648800	Weak transcription	HepG2	liver
3	chr3:142647400-142648800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:142647800-142649600	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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