Variant report
| Variant | rs72999737 |
|---|---|
| Chromosome Location | chr2:145494310-145494311 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:145492152..145494939-chr2:145496594..145499357,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs11689575 | 1.00[ASN][1000 genomes] |
| rs1559963 | 1.00[ASN][1000 genomes] |
| rs4384720 | 1.00[ASN][1000 genomes] |
| rs57477957 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57834922 | 1.00[ASN][1000 genomes] |
| rs58504774 | 1.00[ASN][1000 genomes] |
| rs58811157 | 1.00[ASN][1000 genomes] |
| rs59042570 | 1.00[ASN][1000 genomes] |
| rs66537831 | 1.00[ASN][1000 genomes] |
| rs6718158 | 1.00[ASN][1000 genomes] |
| rs6720379 | 1.00[ASN][1000 genomes] |
| rs67382063 | 1.00[ASN][1000 genomes] |
| rs6752912 | 1.00[ASN][1000 genomes] |
| rs68017203 | 1.00[ASN][1000 genomes] |
| rs72852118 | 1.00[ASN][1000 genomes] |
| rs72852120 | 1.00[ASN][1000 genomes] |
| rs72852133 | 1.00[ASN][1000 genomes] |
| rs72993904 | 1.00[ASN][1000 genomes] |
| rs72993910 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72997876 | 1.00[ASN][1000 genomes] |
| rs72999719 | 1.00[ASN][1000 genomes] |
| rs72999723 | 1.00[ASN][1000 genomes] |
| rs72999734 | 1.00[ASN][1000 genomes] |
| rs72999751 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72999753 | 1.00[ASN][1000 genomes] |
| rs73001719 | 1.00[ASN][1000 genomes] |
| rs73001730 | 1.00[ASN][1000 genomes] |
| rs73001732 | 1.00[ASN][1000 genomes] |
| rs73001735 | 1.00[ASN][1000 genomes] |
| rs73001749 | 1.00[ASN][1000 genomes] |
| rs73001751 | 1.00[ASN][1000 genomes] |
| rs73001753 | 1.00[ASN][1000 genomes] |
| rs73001755 | 1.00[ASN][1000 genomes] |
| rs73001758 | 1.00[ASN][1000 genomes] |
| rs73003700 | 1.00[ASN][1000 genomes] |
| rs73005508 | 1.00[ASN][1000 genomes] |
| rs73005510 | 1.00[ASN][1000 genomes] |
| rs73962039 | 1.00[ASN][1000 genomes] |
| rs73962041 | 1.00[ASN][1000 genomes] |
| rs73963904 | 1.00[ASN][1000 genomes] |
| rs7595770 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002563 | chr2:145182201-145863253 | Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv535957 | chr2:145182201-145863253 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv834397 | chr2:145439528-145608628 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:145463200-145495600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
