Variant report

Variant	rs73000180
Chromosome Location	chr3:142364068-142364069
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142360347..142363924-chr3:142363947..142367785,4	K562	blood:
2	chr3:142329516..142331316-chr3:142363067..142365225,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs72990707	1.00[AMR][1000 genomes]
rs72990714	1.00[AMR][1000 genomes]
rs72994549	1.00[AMR][1000 genomes]
rs73000115	1.00[AMR][1000 genomes]
rs73002059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73002063	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142343400-142366400	Weak transcription	Fetal Intestine Small	intestine
2	chr3:142348800-142364800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:142357000-142371400	Weak transcription	Aorta	Aorta
4	chr3:142357600-142365200	Weak transcription	Colonic Mucosa	Colon
5	chr3:142358600-142365600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:142360800-142371400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:142362400-142364200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:142362400-142366800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:142362600-142371200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:142363400-142364400	Enhancers	HepG2	liver
11	chr3:142363400-142364600	Enhancers	Liver	Liver
12	chr3:142363400-142364600	Enhancers	NHEK	skin
13	chr3:142363400-142365000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr3:142363400-142365200	Enhancers	A549	lung
15	chr3:142363400-142365200	Enhancers	HMEC	breast
16	chr3:142363600-142364200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:142363600-142364400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:142363600-142364400	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr3:142363600-142364800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr3:142363600-142365000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr3:142363600-142365000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:142363600-142365800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:142363600-142367200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:142363800-142364600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr3:142363800-142364600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr3:142363800-142365400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr3:142364000-142364600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr3:142364000-142365000	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr3:142364000-142365000	Enhancers	HUVEC	blood vessel

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